Ive discovered that if you add the following line to the
freeview/Makefile.am file then it will build succcessfully.
freeview_CXXFLAGS = $(QT_CXXFLAGS) $(AM_CXXFLAGS)
freeview_CPPFLAGS = $(QT_CPPFLAGS) $(AM_CPPFLAGS)
-freeview_LDFLAGS = $(QT_LDFLAGS) $(OS_LDFLAGS)
+freeview_LDFLAGS = $(QT_LDFLAGS) $(OS_LDFLAGS) \
+ -Wl,--allow-multiple-definition
freeview_LDADD = $(QT_LIBS) \
$(addprefix $(top_builddir)/, $(LIBS_MGH)) \
$(top_builddir)/vtkfsio/libvtkfsio.a \
Turns out the issue is with the build of LAPACK provided by Ubuntu, as
it contains a duplicate function. (https://cmake.org/Bug/view.php?id=12912)
I will be committing the change and pushing to the git repo after some
testing, probably later this evening.
-Zeke
On 02/19/2016 02:29 PM, Rudolph Pienaar wrote:
> I have been able to build the FS GUI tools succesfully on Ubuntu in the
> past... Admittedly this was a long time ago (pre 14.04 days). I can dig
> through my notes and see if they are still applicable. We no longer have
> any Ubuntu 14.04 boxes -- we're currently on 15.10 ... which I suppose
> in a few weeks will be superseded by 16.04's release.
>
>
> On 2/19/16 12:45 , Z K wrote:
>> Hello Yaroslav,
>>
>> Ive built freesurfer on Debian "Jessie" platform. It was just a matter
>> of adding "libtool-bin" and "tcsh" to the list of packages that need to
>> be installed. Ive update the wiki page:
>>
>>
>> https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page
>>
>> I still wasnt quite able to get the freeview GUI to build. But If you
>> change the "--disable-GUI-build" flag to "--without-qt" then you will
>> get all the tktool GUIs except freeview. Im working on getting freeview
>> to build at the moment and will update the wiki page once I figure it out.
>>
>> -Zeke
>>
>>
>>
>>
>> On 02/18/2016 05:04 PM, Yaroslav Halchenko wrote:
>>> Gotcha, thanks!
>>>
>>> On February 18, 2016 3:27:21 PM EST, Z K <zkauf...@nmr.mgh.harvard.edu>
>>> wrote:
>>>>
>>>>> I would be infinitely grateful if freesurfer could build natively on
>>>> Debian
>>>>> stable! ;) Thanks for trying. In my case I am trying the build
>>>> under jessie
>>>>> chroot (using schroot helper), so I could quickly setup/enter such
>>>> environment
>>>>> while maintaining user/directory. I will do the same now for 14.04.
>>>> If you
>>>>> would like more -- let me know I could give a bit more detailed
>>>>> instructions.
>>>>>
>>>>
>>>> I have a debian jessie system just setup, but I have a high priority
>>>> project due Monday, so I would be able to begin determining the exact
>>>> build procedure on Debian jessie until beginning of next week. It is
>>>> something I have been meaning to do so I plan on getting to it. If you
>>>> dont hear from me by Tuesday/Wedensday feel free to shoot me an email
>>>> for an update. Thanks.
>>>>
>>>> -Zeke
>>>>
>>>>
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>
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