You specify it when you run mkanalysis-sess On 03/04/2016 04:36 PM, Ji Won Bang wrote: > In a simple word, my question is: > > under version 5.3.0, how can I specify funcstem (stem of functional > volume)? I don't see any argument for that.. > > Thanks a lot. > > Best, > Ji Won > > 2016-03-04 16:31 GMT-05:00 Ji Won Bang <kirsten...@gmail.com > <mailto:kirsten...@gmail.com>>: > > Dear. Freesurfer experts. > > Hi. How are you? > > It might be very naive question. > > When using version 4.5.0 I used the command: > mkbrainmask-sess -s $SUBJECT -funcstem fmc -df sessdirfile -fsd > bold_retino > > However under the version 5.3.0, mkbrainmask-sess does not have > -funcstem. > > May I use -maskstem instead of -funcstem? > > If so, after that, I tried: > inorm-sess -s $SUBJECT -motioncor -funcstem fmc -df sessdirfile > -fsd bold_retino > > However, it complains that: > ERROR: cannot find > /home/jbang/Projects/replay/epi/replay06/bold_retino/masks/brain > You may need to run preproc-sess or mkbrainmask-sess to create a > brain mask > > Could you please help? > > Thank you very much. > > Best, > Ji Won > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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