You can just store it in a different directory, then use the --cache-dir option when running mri_glmfit-sim to specify the new folder, eg, if you use --o /path/to/myspace/yoursubject/lh/cortex, then specify /path/to/myspace
On 03/15/2016 12:36 PM, Clara Kühn wrote: > Dear FreeSurfer experts, > > I have a question regarding the Monte Carlo correction. > To create a Monte Carlo correction for my specific sample (4year old kids) > the wiki suggests this command: > mri_mcsim --o $FREESURFER_HOME/average/mult-comp-cor/yoursubject/lh/cortex > --base mc-z --surface yoursubject lh --nreps 10000 > > I have run this command, however I get an error message that I have no rights > to write into the $FREESURFER_HOME directory. I work at an institute where > that directory is stored on a server to which many people have access but no > writing rights (which is definitely a good thing), so getting the rights is > not really an option. I was wondering now whether I could just specify a > different directory or whether it absolutely has to be the $FREESURFER_HOME > directory? If the latter is the case, would you suggest I install a local > copy or do you have any other suggestions? > > Thanks in advance! > Clara > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
