Hi. Daniel. How are you?
Thanks for your reply. That should be another option for me! Thanks, Ji Won 2016-03-17 15:16 GMT-04:00 dgw <dgwake...@gmail.com>: > Hi Ji-Won, > > Why not just input both T1s to recon-all it will motion correct and > average and then all of your functionals will be registered to the > same FS data? > > hth > d > > On Thu, Mar 17, 2016 at 3:06 PM, Ji Won Bang <kirsten...@gmail.com> wrote: > > Dear. All. > > > > Hi. How are you? > > > > It might be a very naive question, but your advice is greatly > appreciated! > > > > I'm trying to register 2 T1s obtained from 1 subject on different days > and > > then register the functional scans to their corresponding T1s > (registering > > the functional scans to the same day's T1). By doing so, I expect to get > > everything into the same space. > > > > (Each subject was scanned twice on two different days etc., day1 and > day2) > > > > After running mri_robust_register onto day2's T1 as targetting day1's > T1, I > > get v2to1.mgz (original T1 is 046.mgz). Then I'd like to run > > preproc-sess(that does registration as well) onto day2's functional > scans. > > > > Is there a way to make preproc-sess do register functional scans of day2 > to > > v2to1.mgz(of day2 that's created by mri_robust_register), not the > original > > 046.mgz? > > > > The commands that I run are: > > > > recon-all -s $SUBJECT -all > > > > mri_robust_register --mov > > /home/jbang/Projects/replay/mri/replay10/mri/orig/046.mgz --dst > > /home/jbang/Projects/replay/mri/replay06/mri/orig/036.mgz --lta > > /home/jbang/Projects/replay/mri/replay10/mri/orig/v2to1.lta --mapmov > > /home/jbang/Projects/replay/mri/replay10/mri/orig/v2to1.mgz --weights > > /home/jbang/Projects/replay/mri/replay10/mri/orig/v2to1-weights.mgz > --iscale > > --satit > > > > preproc-sess -s $SUBJECT -df sessdirfile -fsd bold_sponta -per-run -force > > -fwhm 0 > > > > Please feel free to give me any advice! > > > > Thank you very much. > > > > Best, > > Ji Won > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in > > error > > but does not contain patient information, please contact the sender and > > properly > > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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