Thanks for que quick answer, Marie. If I got right, I should either not smooth it after mri_preproc (no mri_surf2surf) or do it with kernels < 5mm, and that should make to FMHM fall below 30. Am I correct? Thanks, Pedro.
On Wed, Mar 16, 2016 at 3:03 PM, Marie Schaer <marie.sch...@unige.ch> wrote: > > Hi Pedro, > > So lGI is inherently very smoothed, and you don’t want to over smooth > (which is why you get this error), so I usually recommend either no > smoothing (fwhm=0) or fwhm=5mm, given that these are the options easily > inputed in qdec. I’d say try first with 5mm, and check if this work, if it > doesn't decrease to 0mm. And if you want then to work around, you can tune > your smoothing with values in between to achieve a smoothness level of > 15mm, most often with 1 or 2mm, but qdec won’t accept it so you’ll have to > go for the commandline stats. > > Hope it helps, > > Marie > > > > > > > On 16 Mar 2016, at 10:50, Pedro Rosa <pedrogomesr...@gmail.com> wrote: > > > > Dear FreeSurfers, > > I am running a localgi analysis using mri_glmfit and mri_glmfit-sim, and > it seems the last script looked for > freesurfer/average/mult-comp-cor/fsaverage/?h/cortex/fwhm40/abs/th13/mc-z.cdf > and mc-z.csd, but there are precached data until fmhm30. > > How should I proceed? > > Best, > > Pedro. > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > > but does not contain patient information, please contact the sender and > properly > > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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