Hi, I ran into an odd problem which I was able to fix but wanted to let others 
know about.
This is OS X 10.11.4 with Matlab 2016a and FreeSurfer 5.3.

I got the following error when I ran mkcontrast using batch files that 
previously worked fine:

/private/var/folders/wt/vj5q34fs20x50sh_6rcrtkn80000gn/T/Cleanup At 
Startup/sh.h4SI0w: No such file or directory.
ERROR running mkcontrast

Looking into the directories in question, I found that while there was no 
directory named 'Cleanup At Startup’ inside the T directory, there was such a 
directory inside ‘vj5q34fs20x50sh_6rcrtkn80000gn’.  I’m guessing some version 
update changed the location of this directory.  I went into T and performed the 
following command:

mkdir 'Cleanup At Startup'

after doing so, everything worked again.

Cheers!

Joe

--------------------------------------------------------------------------------

Joseph Dien, PhD
Senior Research Scientist
Maryland Neuroimaging Center
University of Maryland, College Park
E-mail: jdie...@mac.com
Cell Phone: 202-297-8117
http://joedien.com

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