Hi,
I'm trying to run asegstats2table
asegstats2table --subjects subjlist.csv --skip --delimiter comma
--common-segs --tablefile asegs_03042016.csv
All subjects in the subjlist are present in the directory but I get this
error message:
Parsing the .stats files
Building the table..
Traceback (most recent call last):
File "/usr/local/freesurfer/bin/asegstats2table", line 560, in <module>
rows, columns, table = sanitize_table(options, pretable)
File "/usr/local/freesurfer/bin/asegstats2table", line 454, in
sanitize_table
_specs, _id_name_map, _measl = _t[0]
IndexError: list index out of range
I get the error message even if I reduce the list to two subjects. It works
if I do this (all subjdirs begin with PD):
asegstats2table --subjects PD* --skip --delimiter comma --common-segs
--tablefile asegs_03042016.csv
And it works if I enter the subjects' names individually. With over 100
subjects, however, that's not an option.
I'd be grateful for any suggestion on how to run asegstats2table with a
subjects list.
Thank you!
sincerely yours,
Lars M. Rimol, PhD
Senior researcher,
Norwegian Advisory Unit for functional MRI
Department of Radiology,
St. Olav's University hospital,
7006 Trondheim,
Norway
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