Hi Martin!
Sorry to bug you but I have one more question. How do I create the Qdec
table without the baseline for that subject? Do I leave the baseline time
point out or I still enter it in the table?

For example
fsid                           fsid-base         years
Study1_Subj1_MRI0.      Study1_Subj1.   0
Study1_Subj1_MRI1.       Study1_Subj1.   1.25
Study1_Subj1_MRI2.       Study1_Subj1.   2.25

OR

Study1_Subj1_MRI1.  Study1_Subj1.    1.25
Study1_Subj1_MRI2.   Study1_Subj1.  2.25

   Thanks!
Mihaela
On Apr 12, 2016 7:13 PM, "Martin Reuter" <mreu...@nmr.mgh.harvard.edu>
wrote:

> It does not compute this. Often people use time-from-baseline for their
> analysis and control for age (@ baseline).
> Best Martin
> On Apr 12, 2016 6:23 PM, Mihaela Stefan <mikaelastep...@gmail.com> wrote:
>
> Thanks Martin!
>
> Related to the longitudinal analysis, should we use the demeaned age at
> baseline or the LME package automatically computes this?
>
> Thanks again!
> Mihaela
> On Apr 12, 2016 5:39 PM, "Martin Reuter" <mreu...@nmr.mgh.harvard.edu>
> wrote:
>
> Hi Michael,
> the longitudinal  image processing pipeline does not care which one is
> baseline and which are follow ups. It only cares what images belong to the
> same subject.
> So, yes you can process this one with only two tone points instead of
> three.
>
> Best Martin
> On Apr 12, 2016 5:09 PM, Mihaela Stefan <mikaelastep...@gmail.com> wrote:
>
> Hello FreeSurfers,
>
> We are conducting a longitudinal analysis and we have a subject who is
> missing the structural at baseline (it has fMRI data though). That subject
> returned for the 1st and the 2nd follow-up. Can we process the longitudinal
> pipeline the usual way and account for the missing baseline in the LME
> analysis?
>
> The other option would be to treat the 1st follow-up as baseline but we
> would like to be consistent with the fMRI analyses and keep the baseline
> time point.
>
> Thanks!
> Mihaela
>
>
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