Hi again, in the paper, we used FreeSurfer 5.3 the process the data (recon-all), and then run the hippocampal module on top of that. So, with a bit of trouble, you can reproduce the results.. However, the 6.0 beta was taken down, so reproducing the results of the recon-all stream would be hard, and since such results affect the hippocampal module, reproducing the subfield segmentation would in turn also be hard. Does this make sense? Cheers, /E
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer From: "Francis Tyson Thomas" <francisttho...@email.arizona.edu> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Thursday, April 14, 2016 1:04:31 AM Subject: Re: [Freesurfer] Freesurfer v6 beta Hi Eugenio, I understood this part that you mentioned but I didn't understand how is is affected and what would be its consequences? Because I am referring to your preprint paper that makes use of v6, so will the results/validity of that paper also get affected by these differences. Because in my work the accuracy of the segmentation outputs are critical both for analysis and speeding it up. Thanks, Tyson On Wed, Apr 13, 2016 at 3:52 PM, Eugenio Iglesias < e.igles...@bcbl.eu > wrote: Hi Tyson, the hippocampal module shouldn't change between your beta and the FS6 release, but the main recon-all stream will. Since the latter is used to initialize the former, the results will be a bit different. Cheers, /Eugenio Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer From: "Francis Tyson Thomas" < francisttho...@email.arizona.edu > To: "Freesurfer support list" < freesurfer@nmr.mgh.harvard.edu > Sent: Wednesday, April 13, 2016 8:19:18 PM Subject: [Freesurfer] Freesurfer v6 beta Hi, I was wondering when would the new Freesurfer v6 beta be available? Also I have been using the old beta for my hippocampal segmentation and I wanted to know if this new beta will affect the results of that? Thanks, Tyson _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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