Hi Zeke, Thank you so much ! It's working really well now. I have one more question- is there any way I can display labels (name of the areas) as well on the maps I see (using tksurfer command you suggested).
Thanks Zeke once again. On Tue, Apr 26, 2016 at 4:44 PM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote: > The "freadFloat: fread failed" is a warning, not an error, and can be > ignored. > > The ces.nii.gz, cesvar.nii.gz, sig.nii.gz files are surface overlays > stored in a "volume" format, so they have to be viewed on the surface. > You can do with this with something like: > > $> tksurferfv fsaverage lh inflated -ov sig.nii.gz -fminmax 2 3 > > -Zeke > > > On 04/26/2016 04:07 PM, Martin Juneja wrote: > > Hello again, > > > > Somehow I figured out the error I had related to *.config. Now I am able > > to run successfully all the 8 steps for 1 subject. I can see all the > > files generated in a new folder i.e. ces.nii.gz, cesvar.nii.gz, > > sig.nii.gz etc. > > But when I try to display any of these files using FreeView (after > > overlaying over inflated surface), it doesn't display anything and gives > > me error "freadFloat: fread failed". > > > > I would really appreciate any suggestions how can I display functional > > connectivity maps? > > > > Thanks, > > MJ > > > > On Tue, Apr 26, 2016 at 10:53 AM, Martin Juneja <mj70...@gmail.com > > <mailto:mj70...@gmail.com>> wrote: > > > > Hello everyone, > > > > I am following this page to process fMRI data: > > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthrough > > > > I am able to run until step-3 but at step 4, I am not sure what > > should be directory to run this command. If I run the command in > > SUBJECTS_DIR directory, it runs for a second and creates a > > mean*.config file. But next step 5 requires *.config file to run, > > not the mean*.config > > > > Just a quick background: > > I preprocessed all subjects structural data using recon-all and the > > processed folders are in my FreeSurfer SUBJECTS_DIR path and the > > folder after preprocessing functional data (after running step-3) is > > also in SUBJECTS_DIR path. > > > > Any help would be greatly appreciated. > > > > MJ > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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