Dear Bruce, Thank you for your reply. I think I've just discovered the issue. I was using Ubuntu 16.04 and it seems that FS does not work with Ubuntu 16.04. I've just tried with Ubuntu 14.04 and FS is working. I'm now processing one image.
The commands that I use: recon-all -subjid fsresult -i OAS1_0001_MR1_mpr-1_anon.img recon-all -all -subjid fsresult Do you know if FS works with Ubuntu 16.04? Cheers, Vitor On 25 May 2016 at 17:38, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > HI Vitor > > can you send us your command line and full screen output? We definitely > support img/hdr, but note that it may not contain enough info to figure out > the true anatomical directions (e.g. left from right) > > cheers > Bruce > > On Wed, 25 May 2016, Gouveia, Vítor wrote: > > Hello, >> I've been trying to process a subject from the OASIS database with >> FreeSurfer 5.3. FS is relative new to me. I'm trying to use recon-all with >> -all but the format img/hdr does not seem supported. Do you have any ideia >> what should I do to process these images? >> >> Thank you. >> >> Sincerely, >> Vitor >> >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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