recon-all -s yoursubjectname -i /path/to/one/dicomfile.dcm tksurfer yoursubjectname lh pial -ov $SUBJECTS_DIR/yoursubjectname/surf/lh.thickness -fminmax .1 3
On 05/24/2016 08:34 PM, HARI GURAGAIN wrote: > Hello, > > I am kind of new to the neuroimaging. I was trying to reproduce the > following type of figure in freesurfer (3d image with thickness). But > I couldn’t do that. Is it possible for anyone to explain how to > generate such figure from mri data. Just to clarify, I have the mri > data in the form of *.dcm. Is there any specific command to get > through it? I tried to work on similar figures using tksurfer *** but > couldn’t produce. > > Your help is greatly appreciated. > Thank you, > > Hari > unknown.tiff > This figure is from one paper. > Fig. 4. 3D models of the pial surfaces generated by FreeSurfer with a > colored overlay of the local cortical thickness in mm. The top row > shows the pial surfaces of the left and right > hemisphere based on data with an isotropic resolution of 0.5 mm and > the bottom row with an isotropic resolution of 1 mm; both data sets > have been acquired at 7 T. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
