Hi Trisanna you can use the -cm flag, but typically what we do is let recon-all "conform" the data to 1mm, then do a post-hoc surface deformation with the original highres data using mris_make_surfaces
cheers Bruce On Wed, 25 May 2016, Trisanna Sprung-Much wrote: > Hi there > > My initial email didn't seem to have sent and so I am re-sending it: > > I would like to know if it is possible to create surfaces from a scan that > is 0.5mm isotropic. I tried to run recon-all on our MNI 2009b atlas which is > 0.5mm cubed and it crashed quite quickly afterwards. I wonder if this has to > do with the fact that Freesurfer tried to conform it to 1mm isotropic? > > When I ran recon-all on the 1mm atlas it created some nice surfaces. > > Let me know if you would like the .log as I cannot seem to make much sense > of it. > > best wishes > > Trisanna > -- > Ph.D. CandidateMcGill University > Integrated Program in Neuroscience > Psychology > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
