Hello Anastasia, sorry for few information and let me tell you command and error log.
Command: trac-all –stat –c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.example Error log: Loading output reference volume from /Applications/freesurfer/subjects/cvs_avg35 corRead(): can't open file /Applications/freesurfer/subjects/cvs_avg35/COR-.info ERROR: Could not read /Applications/freesurfer/subjects/cvs_avg35 dmrirc.example (configuration file) is attached to this e-mail. Thanks in advance, Anri ********************************************************************** 京都府立医科大学附属病院 精神科・心療内科 渡辺 杏里 ********************************************************************** Anri WATANABE, M.D. Department of Psychiatry, University Hospital, Kyoto Prefectural University of Medicine ********************************************************************** 2016-05-27 22:57 GMT+09:00 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>: > > Hi Anri - I do not know what command line you ran and what your > configuration file looks like, so it is very hard for me to suggest > solutions. > > Best, > a.y > > > On Fri, 27 May 2016, Anri WATANABE wrote: > > Hi Anastasia, >> Thank you for your answer. >> There aren't stats/*.path.mean.txt files and terminal says 'Could not >> read /Applications/freesurfer/subjects/cvs_avg35.' I >> checked /Application/freesurfer/subjects/cvs_avg35 folder and couldn't >> find COR-.info file. >> Could you tell me any resolutions, please? >> >> Thanks, >> Anri >> >> ********************************************************************** >> 京都府立医科大学附属病院 >> 精神科・心療内科 >> 渡辺 杏里 >> ********************************************************************** >> Anri WATANABE, M.D. >> Department of Psychiatry, >> University Hospital, Kyoto Prefectural University of Medicine >> ********************************************************************** >> >> 2016-05-21 6:48 GMT+09:00 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu >> >: >> >> Hi Anri - The FA values are extracted in the native space of each >> subject, which is why those are the only >> coordinates that you see. If you want to display the results of >> your analysis on an average path, after >> running trac-all -stat, you can use the stats/*.path.mean.txt files >> (see also the last part of the TRACULA >> tutorial). >> >> Best, >> a.y >> >> On Wed, 18 May 2016, Anri WATANABE wrote: >> >> Dear experts, >> I use TRACULA to examine a measure (FA) at each voxel in one >> pathway. >> pathstats.byvoxel.txt files show coordinates in native space >> and after converting those the new >> files don't show any coordinates which are in MNI space. >> Could you tell me how can I know MNI coordinate values? >> >> Thank you! >> >> >> Regards, >> Anri >> >> >> >> >> ********************************************************************** >> 京都府立医科大学附属病院 >> 精神科・心療内科 >> 渡辺 杏里 >> >> ********************************************************************** >> Anri WATANABE, M.D. >> Department of Psychiatry, >> University Hospital, Kyoto Prefectural University of Medicine >> >> ********************************************************************** >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
dmrirc.example
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