Hi Anri - Can you also send your log file (scripts/trac-all.log)? I'll
need to see what exactly was running when the error occurred. Thanks!
a.y
On Sat, 28 May 2016, Anri WATANABE wrote:
Hello Anastasia,sorry for few information and let me tell you command and error
log.
Command: trac-all –stat –c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.example
Error log: Loading output reference volume from
/Applications/freesurfer/subjects/cvs_avg35
corRead(): can't open file /Applications/freesurfer/subjects/cvs_avg35/COR-.info
ERROR: Could not read /Applications/freesurfer/subjects/cvs_avg35
dmrirc.example (configuration file) is attached to this e-mail.
Thanks in advance,
Anri
**********************************************************************
京都府立医科大学附属病院
精神科・心療内科
渡辺 杏里
**********************************************************************
Anri WATANABE, M.D.
Department of Psychiatry,
University Hospital, Kyoto Prefectural University of Medicine
**********************************************************************
2016-05-27 22:57 GMT+09:00 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>:
Hi Anri - I do not know what command line you ran and what your
configuration file looks like, so it is very
hard for me to suggest solutions.
Best,
a.y
On Fri, 27 May 2016, Anri WATANABE wrote:
Hi Anastasia,
Thank you for your answer.
There aren't stats/*.path.mean.txt files and terminal says 'Could
not read
/Applications/freesurfer/subjects/cvs_avg35.' I
checked /Application/freesurfer/subjects/cvs_avg35 folder and
couldn't find COR-.info file.
Could you tell me any resolutions, please?
Thanks,
Anri
**********************************************************************
京都府立医科大学附属病院
精神科・心療内科
渡辺 杏里
**********************************************************************
Anri WATANABE, M.D.
Department of Psychiatry,
University Hospital, Kyoto Prefectural University of Medicine
**********************************************************************
2016-05-21 6:48 GMT+09:00 Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu>:
Hi Anri - The FA values are extracted in the native space of
each subject, which is why
those are the only
coordinates that you see. If you want to display the results
of your analysis on an average
path, after
running trac-all -stat, you can use the stats/*.path.mean.txt
files (see also the last part
of the TRACULA
tutorial).
Best,
a.y
On Wed, 18 May 2016, Anri WATANABE wrote:
Dear experts,
I use TRACULA to examine a measure (FA) at each voxel
in one pathway.
pathstats.byvoxel.txt files show coordinates in native
space and after converting
those the new
files don't show any coordinates which are in MNI space.
Could you tell me how can I know MNI coordinate values?
Thank you!
Regards,
Anri
**********************************************************************
京都府立医科大学附属病院
精神科・心療内科
渡辺 杏里
**********************************************************************
Anri WATANABE, M.D.
Department of Psychiatry,
University Hospital, Kyoto Prefectural University of
Medicine
**********************************************************************
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