That's my bad. I tried with selxavg3-sess and I get a different error saying no contrasts and to create contrasts with mkcontrast-sess or run with -no-con-ok. Is it possible I did mkanalysis-sess wrong? Thanks! Talia
________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Wednesday, June 01, 2016 5:21 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Selxavg3-sess with no-con-ok and ROI analyses Are you using selxavg-sess or selxavg3-sess. you should be using selxavg3-sess On 06/01/2016 03:45 PM, Raney, Talia L. wrote: > Okay, the thing is that when I remove the no-con flag I get this error > "ERROR: the design type of this analysis is notask > selxavg-sess can only be used to analyse event-related and blocked", which > means I have to change the analysis.info using mkanalysis-sess,correct? Which > flag would I use then? Does this mean then that I have to use the seed as a > task regressor? > Thank you! > Best, > Talia > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Wednesday, June 01, 2016 2:42 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Selxavg3-sess with no-con-ok and ROI analyses > > Don't include the -no-con-ok flag. For resting state, you don't need to > run mkcontrast-sess because a contrast will automatically be created for > you. > > On 06/01/2016 02:24 PM, Raney, Talia L. wrote: >> Hi FreeSurfer users, >> I have some resting state data that I preprocessed and conducted first level >> analyses using the flag -no-con-ok. Since no ces.nii.gz or sig.nii.gz is >> createdcomes up because there is no contrast, I'm wondering if it's possible >> to conduct functional ROI analyses with the data processed this way. Or >> would I have to do ROI analyses with the data processed in a seed-based >> manner where the seed is the "contrast"? >> Best, >> Talia >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
