From the names, it looks like both the seg vol and the template vol are both in mni152. Where did Yeo2011_17Networks_MNI152_FreeSurferConformed1mm_LiberalMask.nii.gz come from? One thing you can try is to invert the registration by adding --invertmtx to the command line.
On 8/2/16 8:18 AM, Matyáš Kuhn wrote: > Hi Freesurfer experts, > > I just started to use Freesurfer and I was wondering how can I convert > images from MNI305 which uses Freesurfer to MNI152 which is used by SPM. > We would like to get MNI152 template of Yeo parcelation > (http://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011) > so we can overlay with our results from SPM fMRI analysis. > > I tried this: > mri_label2vol --seg > /path_to_analysis/Yeo2011_17Networks_MNI152_FreeSurferConformed1mm_LiberalMask.nii.gz > \ > --temp > /path_to_analysis/Template_T1_IXI555_MNI152.nii \ > --reg > $FREESURFER_HOME/average/mni152.register.dat \ > --o /path_to_analysis/output_mni152.nii > > which resulted in image full of zeros (so maybe problem with > registration?). The "Template_T1_IXI555_MNI152.nii" is the MNI152 > template which is used by Computational anatomical toolbox 12 for SPM > from Christian Gaser and his group. > > Thanks in advance for any suggestions, > > Matyas > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
