Hello Paul, Doug is essential correct. You can download 5.3 (or the development version) and just extract it to a different location. Something like:
$> mkdir /usr/local/freesurfer_5.3 $> tar -C /usr/local/freesurfer_5.3 -xzvf freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz Then you are free to source either version - just make sure you to do in a separate terminal window. Also, You can download freesurfer 5.3 or the Development version (see "Development Version") from the following page: https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall Hope this helps. -Zeke > Zeke will know better than me, but I think the new version folder name > will be different, so there should not be any conflict. You will just > need to reference the new source file > > On 08/17/2016 12:23 PM, miracoo...@gmail.com wrote: >> Sure. Also, do you know how I can upgrade to either without uninstalling >> FS 5.1? >> >> Sent from my BlackBerry 10 smartphone. >> Original Message >> From: Douglas N Greve >> Sent: Tuesday, August 16, 2016 4:01 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Reply To: Freesurfer support list >> Subject: Re: [Freesurfer] malloc_error_break/ can't allocate region >> >> That sounds fishy. I would use the 5.3 or 6.0 version. >> >> On 08/16/2016 03:51 PM, miracle ozzoude wrote: >>> FS 5.1.0. I tried it with 5000 reps for ROI analysis and it worked. >>> >>> On Tue, Aug 16, 2016 at 3:46 PM, Douglas N Greve >>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >>> >>> What version of FS (and mri_mcsim) are you using? Does it die if >>> you run >>> with just a few reps (eg, 100)? >>> >>> On 08/16/2016 01:21 PM, miracle ozzoude wrote: >>>> Hello FreeSurfer team, >>>> While running monte carlo correction with 10000 reps (mri_mcsim) for >>>> the whole hemisphere, I received this error at 975 reps for the left >>>> hemisphere >>>> >>>> " 975 3197.9 0 mri_mcsim(25495) malloc: ***mmap(size=16777216) >>> failed >>>> (error code=12) >>>> *** error: can't allocate region >>>> *** set a breakpoint in malloc_error_break to debug >>>> Bus error" >>>> What does this mean and how can I resolve it? Below was my mri_mcsim >>>> command line " mri_mcsim --o >>>> wholebrainanalysis/average/mult-comp-cor/fsaverage/lh/cortex --base >>>> mc-z --surface fsaverage lh --nreps 10000" >>>> >>>> Thank you >>>> Paul >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> Phone Number: 617-724-2358 <tel:617-724-2358> >>> Fax: 617-726-7422 <tel:617-726-7422> >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> <https://gate.nmr.mgh.harvard.edu/filedrop2> >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to >>> whom it is >>> addressed. If you believe this e-mail was sent to you in error and >>> the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> http://www.partners.org/complianceline >>> <http://www.partners.org/complianceline> . If the e-mail was sent >>> to you in error >>> but does not contain patient information, please contact the >>> sender and properly >>> dispose of the e-mail. >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
