Hi Adil, My understanding is that, you can always change the location of SUBJECTS_DIR. Just use this command: setenv SUBJECTS_DIR <Your location of interest>
You do not need to mention this new address in your recon-all command. Good luck > HI,1-I'm working with FreeSurfer that is on a server. I don't have > permission to create files under the $SUBJECTS_DIR. Is there any way I > can specify -subject to be in a directory for which I do have permission? > for example: recon-all -subject /location of the file or my own > subject_dir location -all > 2-Also, Is there a way to segment the cortices as a whole, like left and > right frontal cx, parietal cx, temporal cx, occipital cx? > > > Thanks, > AJ_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
