Can you send the command line, the sum file, and a pic of the surface?
On 08/23/2016 04:39 AM, Oana Georgiana Rus wrote: > > Dear Freesurfer experts, > > I have run an analysis on GM Volume in Freesurfer. > > The interested contrast was patients vs. controls. (/command mri_glimfit/) > > I then ran /mri_surfcluster/ command to get a text file with the > significant clusters FDRcorrected and their peak coordinatesn- > resulting in a *sig.mgh image* and a *sig.sum file*. > > *After looking at the sig.mgh image with tksurfer and searching for > the significant clusters in the sig.sum files, I realized that one > cluster which is pretty big is missing in the sig.mgh image but is > present in the sig.sum file.* > > *Do you know why this could happen?Why is the image incomplete?* > > *Anybody encounterd something similar?* > > Because in the next step I want to extract the values of the > significant clusters and correlate them with clinical scores, it would > be good if thenumber of clusters in the result image and the result > file coincide. > > Thanks in advance for your help. > > Best, > > Georgiana > > > > > -- > Oana Georgiana Rus > PhD Student > Neuroimaging Center TUM-NIC > Klinikum rechts der Isar > Technische Universität München > Einsteinstr.1 > 81675 München > Raum 5.8 > > Tel. 089 4140 7971 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
