Hi Vasudev
those areas are definied in the aseg.mgz (and the wmparc.mgz), so you
should be able to get them from either of those volumes.
cheers
Bruce
On Thu, 25 Aug
2016, Dev vasu wrote:
Dear all,
After running through recon-all ,I have obtained wmparc parcellation file (see
the attached figure ). I would like to obtain parcellation at specific regions
of
interest for my study i.e Brain stem region and Thalamus region, could you
please
let me know how i could perform parcellation for these two specific regions of
interest ( i.e. Brain stem and Thalamus ).
Thanks
Vasudev
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