Hi, I'm very new to Freesurfer, and I am trying to get subject-specific masks from the output of recon all that I can use on my functional data. I was going to isolate regions from the aparc+aseg files to create the ROIs. In my visual checks, I noticed that the pial surface often leaves off parts of the amygdala and hippocampus even though they are contained within the correct label of the aparc+aseg image. For my purposes, should I be concerned that these regions are not contained within the surface?
Sincerely, Eryka Nosal Research Tech The University of Chicago Department of Psychiatry & Behavioral Neuroscience Clinical Neuroscience & Psychopharmacology Research Unit (CNPRU) Phone: (773) 834-4113 Website: http://cnpru.bsd.uchicago.edu/research.html ******************************************************************************** This e-mail is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged and confidential. If the reader of this e-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is prohibited. If you have received this e-mail in error, please notify the sender and destroy all copies of the transmittal. Thank you University of Chicago Medicine and Biological Sciences ********************************************************************************
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