Hi, I have a short question about the additional T2 scan as well.
If I perform the full recon-all; recon-all -s mySubject -i myT1.nii -T2 myT2.nii -T2pial -all -hippocampal-subfields-T1T2 do I still have to precise myT2scan.nii.gz T2 for using the t2 for the hippocampal subfields as well ? or it will automatically take the t2 precised for the t2pial ? Cheers, Pierre On Mon, Sep 5, 2016 at 4:13 PM, Iglesias, Eugenio <e.igles...@ucl.ac.uk> wrote: > The same one; just change the input file and the analysis ID > > - T2: recon-all -s mySubject -hippocampal-subfields-T1T2 > myT2scan.nii.gz T2 > > - FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2 > myFLAIRscan.nii.gz FLAIR > > Cheers, > > /Eugenio > > Juan Eugenio Iglesias > Senior Research Fellow > Translational Imaging Group > University College London > http://www.jeiglesias.com > http://cmictig.cs.ucl.ac.uk/ > > > On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata <r...@njit.edu> wrote: > > Dear FS experts, > > I have a question about the "segmentation with an additional scan - > multispectral segmentation" > on the hippocampal sf segmentation, FS dev. 6.0. > > For controls on which I had already run recon-all -all, I added the T2 > sequence with the following > command: > > > recon-all -s <subject_name> \ > -hippocampal-subfields-T1T2 <file name of additional scan> <analysisID> > > Now, if I want to do the same thing with FLAIR as the additional input, which > flag should I use? > > Thank you, > > Renata > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- DEMAN Pierre Mobile : +33 7 82 57 80 94
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