Hi Zeke, Thanks for your reply! The issue has been resolved - it was the temp folder on the system running out of space. But thank you very much for your suggestions!
Best, Qinggang On Tue, Oct 18, 2016 at 10:07 AM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote: > What version of perl are you using? > > $> perl --version > > If its perl 5.20 (or maybe 5.22) than the error you are encountering is > because because that version of perl is incompatible with the MNI tools > shipped with the version of freesurfer you are using. > > The easiest way to remedy the situation is to download and install the > development version of freesurfer which fixes this issue and will be > included in the upcoming 6.0 release (see "Development Version"): > > https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall > > -Zeke > > On 10/17/2016 12:32 PM, Qinggang Yu wrote: > > Hello FreeSurfer Developers, > > > > I was trying to run recon-all -all, and it failed roughly 30s after it > > started running, with the error message being: recon-all -s bert exited > > with errors. > > > > Freesurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 > > Platform: Red Hat Enterprise Linux Client Release 5.2 > > uname -a: Linux schizo.psych.med.umich.edu > > <http://schizo.psych.med.umich.edu> 2.6.18-92.1.13.el5 #1 SMP Wed Sep 24 > > 19:32:05 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux > > recon-all.log: see attached > > > > Please let me know how I can fix this. Thank you very much! > > > > Best, > > Qinggang > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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