The * is what makes the script useful as that allows it to process all the subjects without you having to specify every subject. That script only works if you have already set up your subject's folders in the directory structure freesurfer expects. Is this the case? Or are you working from dicom files?
On 10/15/2016 02:52 PM, Farzaneh keyvanfard wrote: > /Dear expert,/ > / > / > /I want to run recon-all for 100 subject /simultaneously. I found the > following link about it, but as I'm a beginner in this field, I don't > understand how to use it. Would you please kindly give an example with > a subject names, directory , etc. what should be written instead of * > , or how could I define the number of subjects, ...? Thank you very much. > https://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/Scripts/Two > Best Regards > > > F.Keyvanfard > ------------------------------------------------------------------------ > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
