That seems to be for Monte Carlo simulation. What if I use FDR or if I want to look at a plot from an uncorrected map?
Thanks! Mihaela On Mon, Nov 7, 2016 at 3:16 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > Run mri_glmfit-sim using the Qdec output folder as the --glmdir and > setting the thresholds and signs as you had them in qdec. The output > will then be in a file called something like cache.th20.pos.y.ocn.dat. > the cluster summary table will be in cache.th20.pos.sig.cluster.summary > > > On 11/07/2016 12:33 PM, Mihaela Stefan wrote: > > Hello Freesurfers, > > > > I am doing a group analysis using Qdec. I have a few significant > > clusters and I would like to plot one of them. Qdec does that if I > > click on 'Find Clusters and Goto Max' but I don't see options for the > > design of the plot. > > How can I export the thickness values from my cluster to reproduce the > > Qdec plot in another program? > > > > Thank you! > > Mihaela > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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