Hi Elijah, can you repost with previous correspondence included? We get a lot of emails here and can't keep track of each person's issue. thanks!
doug On 11/11/2016 08:06 PM, Elijah Mak wrote: > Hi, > > A bit more info: the stack of thickness maps consists of > lh.thickness.fwhm15.fsaverage.mghs that were created after -qcache. I > used mri_concat --f --o to create the stack of mghs. I also noticed > that the vertex values are in the range of 20-30, whereas those in the > lh.thickness.fsvaerage mghs are in the expected range. > > Should I be using this for the calculation of the thickness in the > clusters instead? > > Best Wishes, > Elijah > > On Sat, Nov 12, 2016 at 12:15 AM, Elijah Mak <fk...@medschl.cam.ac.uk > <mailto:fk...@medschl.cam.ac.uk>> wrote: > > Thanks, Doug. > > It works but I am not sure if the values I'm getting are correct. > Is this supposed to be reporting the mean cortical thickness of > each cluster? I have pasted the output below from the avgwf > below. The names of the clusters correspond to the regions from > the "summary" text, am I right? > > > Group lh_fusiform lh_precentral lh_insular lh_precuneus > lh_parsorbitalis > 1 24.29454 29.53935 14.24736 28.97924 > 31.54577 > 1 25.68872 28.26156 17.47828 28.20604 > 30.38902 > 2 25.46281 30.75879 19.34943 29.59019 > 32.0404 > 2 25.55514 27.23871 17.27937 29.14274 > 29.75657 > > > Another related question: Is it possible to simply take the mean > cortical thickness across the voxels exceeding p<0.001 from the > uncorrected sig.mgh? > > Thanks again! > > Best Wishes, > Elijah > > > > > -- > > Elijah Mak, Gates Scholar > > PhD Candidate *|* Psychiatry > > University of Cambridge > > Trinity College, Cambridge, CB2 1TQ > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
