recon-all all will register the two together and reslice the flair into the conformed space, so you should not have to worry about it
On 12/14/2016 06:23 PM, Octavian Lie wrote: > Dear All, > > Our MPRAGE and T2 SPACE FLAIR sequences are acquired at times during > two different scans, and the MPRAGE seq further gets reoriented in a > pipeline upstream of the Freesurfer step. > For best results, does the FLAIR volume have to be reoriented (and > resliced) in a rigid registration to the MPRAGE before recon-all -all > stage, or it does not matter? > > Thank you, > > Octavian > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
