Is the file you created located in /Applications/freesurfer? Also, fir good measure, try creating the same file but naming it .license in the /Applications/freesurfer
On 12/16/2016 11:20 AM, Marco Ganzetti wrote: > Dear all, > I am trying to display a volumetric file to a surface using mri_vol2surf > and then tksurfer. > Here is the error message I get. > > I have obtained the email with the few license lines to copy in a file > (that i created) name license.txt > I created a new file and erased the existing LICENSE > > Thanks > Marco Ganzetti > > Last login: Fri Dec 16 16:56:54 on ttys002 > -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /Applications/freesurfer > FSFAST_HOME /Applications/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /Applications/freesurfer/subjects > MNI_DIR /Applications/freesurfer/mni > FSL_DIR /usr/local/fsl > Binds-MacBook-Pro:~ Marco$ source ~/.bash_profile > -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /Applications/freesurfer > FSFAST_HOME /Applications/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /Applications/freesurfer/subjects > MNI_DIR /Applications/freesurfer/mni > FSL_DIR /usr/local/fsl > Binds-MacBook-Pro:~ Marco$ export > SUBJECTS_DIR=/Users/Marco/Desktop/surface_RORDEN > Binds-MacBook-Pro:~ Marco$ mri_vol2surf --src > /Users/Marco/Desktop/surface_RORDEN/GM_SPM12_OneSampT_tstat1.nii > --regheader elab --hemi lh --o > /Users/Marco/Desktop/surface_RORDEN/GM_SPM12_OneSampT_tstat1_SURF_LH.mgh > srcvol = /Users/Marco/Desktop/surface_RORDEN/GM_SPM12_OneSampT_tstat1.nii > srcreg unspecified > srcregold = 0 > srcwarp unspecified > surf = white > hemi = lh > reshape = 0 > interp = nearest > float2int = round > GetProjMax = 0 > INFO: float2int code = 0 > Done loading volume > Computing registration from header. > Using /Users/Marco/Desktop/surface_RORDEN/elab/mri/orig.mgz as target > reference. > Reading surface /Users/Marco/Desktop/surface_RORDEN/elab/surf/lh.white > Done reading source surface > Mapping Source Volume onto Source Subject Surface > 1 0 0 0 > using old > Done mapping volume to surface > Number of source voxels hit = 41923 > Writing to > /Users/Marco/Desktop/surface_RORDEN/GM_SPM12_OneSampT_tstat1_SURF_LH.mgh > Dim: 116772 1 1 > Binds-MacBook-Pro:~ Marco$ tksurfer elab lh inflated -overlay > /Users/Marco/Desktop/surface_RORDEN/GM_SPM12_OneSampT_tstat1_SURF_LH.mgh > subject is elab > hemi is lh > surface is inflated > surfer: current subjects dir: /Users/Marco/Desktop/surface_RORDEN > surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /Users/Marco > checking for nofix files in 'inflated' > Reading image info (/Users/Marco/Desktop/surface_RORDEN/elab) > Reading /Users/Marco/Desktop/surface_RORDEN/elab/mri/orig.mgz > surfer: Reading header info from > /Users/Marco/Desktop/surface_RORDEN/elab/mri/orig.mgz > -------------------------------------------------------------------------- > ERROR: FreeSurfer license file /Applications/freesurfer/.license not found. > If you are outside the NMR-Martinos Center, > go to http://surfer.nmr.mgh.harvard.edu to > get a valid license file (it's free). > If you are inside the NMR-Martinos Center, > make sure to source the standard environment. > -------------------------------------------------------------------------- > Binds-MacBook-Pro:~ Marco$ > > - - - > > *Marco Ganzetti, PhD* > > Movement Control & Neuroplasticity Research Group > Tervuursevest 101, 3001 Leuven > > email: marco.ganze...@kuleuven.be <mailto:marco.ganze...@kuleuven.be> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
