Hi Robert disk space and permissions are really the only two things I can think of. Can you try writing it somewhere else? Or using .mgz as output (or .nii without the .gz)?
cheers Bruce On Wed, 4 Jan 2017, Wujek, Robert wrote: > I'm trying to convert a group of .dcm files to .nii.gz, but I've been getting > the following output with an error at the end... > > mri_convert IM-0020-0001.dcm example.nii.gz > > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ > > reading from IM-0020-0001.dcm... > > Starting DICOMRead2() > > dcmfile = /Users/Desktop/example/IM-0020-0001.dcm > > dcmdir = /Users/Desktop/example > > Ref Series No = 23 > > Found 482 files, checking for dicoms > > Found 480 dicom files in series. > > First Sorting > > Computing Slice Direction > > Vs: 0 0 3 > > Vs: 0 0 1 > > Second Sorting > > Counting frames > > nframes = 6 > > nslices = 80 > > ndcmfiles = 480 > > PE Dir = ROW (dicom read) > > TransferSyntaxUID: --1.2.840.10008.1.2.1-- > > jpegUID: --1.2.840.10008.1.2.4-- > > Loading pixel data > > TR=7584.00, TE=11.10, TI=1500.00, flip angle=111.00 > > i_ras = (-1, 0, 0) > > j_ras = (0, -1, 0) > > k_ras = (-0, -0, 1) > > writing to example.nii.gz... > > niiWrite(): error opening file example.nii.gz > > ERROR: failure writing example.nii.gz? > > I'm wondering how I should interpret this error. I have disk space, and > proper permissions. I also have experience using mri_convert with other > projects, so generally speaking, I am capable with this script. I would > appreciate any suggestions. Thank you. > > -Robert Wujek? > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
