Good Afternoon Support Team, Per step one of your PETSURFER tutorial, the command: gtmseg --s <subject>?, where the <subject> is the name of the subject that we had ran recon-all, outputs the error as described in out.txt attached in this email. If you have the time, it would be much appreciated if you can help us resolve this issue. Thank you for your time.
Warmest Regards, Anderson Napolitano?
Mon Jan 9 13:19:45 MST 2017 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer /usr/local/freesurfer/bin/gtmseg --s M87151031-2016002-BL freesurfer-Darwin-OSX-stable-v6-beta-20161116-5037eae $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Darwin ripl4.health.unm.edu 16.0.0 Darwin Kernel Version 16.0.0: Mon Aug 29 17:56:20 PDT 2016; root:xnu-3789.1.32~3/RELEASE_X86_64 x86_64 xcerebralseg --s M87151031-2016002-BL Mon Jan 9 13:19:45 MST 2017 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer /usr/local/freesurfer/bin/xcerebralseg --s M87151031-2016002-BL freesurfer-Darwin-OSX-stable-v6-beta-20161116-5037eae $Id: xcerebralseg,v 1.11 2016/03/04 23:05:31 greve Exp $ Darwin ripl4.health.unm.edu 16.0.0 Darwin Kernel Version 16.0.0: Mon Aug 29 17:56:20 PDT 2016; root:xnu-3789.1.32~3/RELEASE_X86_64 x86_64 mri_ca_label -align -nobigventricles /usr/local/freesurfer/subjects/M87151031-2016002-BL/mri/nu.mgz /usr/local/freesurfer/subjects/M87151031-2016002-BL/mri/transforms/talairach.m3z /usr/local/freesurfer/average/aseg+spmhead+vermis+pons.ixi.gca /usr/local/freesurfer/subjects/M87151031-2016002-BL/tmp/tmpdir.xcerebralseg.41283/seg1.mgh sysname Darwin hostname ripl4.health.unm.edu machine x86_64 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer mri_ca_label -align -nobigventricles /usr/local/freesurfer/subjects/M87151031-2016002-BL/mri/nu.mgz /usr/local/freesurfer/subjects/M87151031-2016002-BL/mri/transforms/talairach.m3z /usr/local/freesurfer/average/aseg+spmhead+vermis+pons.ixi.gca /usr/local/freesurfer/subjects/M87151031-2016002-BL/tmp/tmpdir.xcerebralseg.41283/seg1.mgh dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /usr/local/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib dyld: Symbol not found: ___emutls_get_address Referenced from: /usr/local/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib Abort ERROR: ERROR: xcerebralseg --s M87151031-2016002-BL gtmseg exited with errors
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