Those will not be adjusted for nuisance values
On 01/18/2017 06:59 PM, hiroki.s...@med.tohoku.ac.jp wrote: > Thanks Douglas. > My command lines are > > 'mri_surfcluster --in > /Volumes/My_Book_Thunderbolt_Duo/subjects_DCNTDC/qdec/Untitled/rh-Diff-WT-Hetero-Intercept-thickness/sig.mgh > --thmin <FDR-determined threshold> --subject fsaverage --hemi rh --ocn > ocn.mgh' > > 'mri_segstats --i > /Volumes/My_Book_Thunderbolt_Duo/subjects_DCNTDC/qdec/Untitled/y.mgh --seg > ocn.mgh --excludeid 0 --avgwf y.ocn.dat --sum ocn.sum' > > I referred previous archives. > Are there anything wrong? > > Best Regards, > Hiroki > > > On Wed, 18 Jan 2017 15:20:39 -0500, Douglas N Greve > <gr...@nmr.mgh.harvard.edu> wrote: >> what are your command lines? >> >> >> On 01/18/2017 01:39 AM, hiroki.s...@med.tohoku.ac.jp wrote: >>> Dear experts, >>> >>> I have some questions. >>> I did Qdec group analysis with three nuisance factors. And one region >>> remained after FDR correction. >>> Then I did 'mri_surfcluster' specifying the FDR-determined voxel-wise >>> threshold as the --thmin. >>> After that I ran 'mri_segstats' and got the values. >>> >>> 1)Are these values 'nuisance factors adjusted' values? >>> >>> 2)If not, is there a way to get 'nuisance factors adjusted' values > using >>> FreeSurfer? >>> >>> Best Regards, >>> Hiroki >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
