glad it was something easy :)
On Mon, 13 Feb 2017, Gronenschild Ed (NP)
wrote:
Hi Bruce,
All output generated is redirected to a temporary log file by me.
Fortunately, it is still available
and when I look at it I see what happened: it doesn’t find Matlab runtime in
the FreeSurferv6
directory. I’m sorry about this, I just have to copy the MCRv80 from
FreeSurferv6b to v6 and
it will do the hippocampal subfields segmentation.
Cheers,
Ed
On 13 Feb 2017, at 18:00, freesurfer-requ...@nmr.mgh.harvard.edu wrote:
Hi Ed
was there any error message or anything? It just seems to end
normally
but then gives a nonzero exit code causing recon-all to stop?
cheers
Bruce
On Mon, 13 Feb
2017, Gronenschild Ed (NP) wrote:
Hi,
All datasets that I've processed sofar with v6
resulted in exactly the same error during running
the command:
mris_anatomical_stats -th3 -mgz -f
../stats/rh.BA_exvivo.thresh.stats -b -a
./rh.BA_exvivo.thresh.annot -c
./BA_exvivo.thresh.ctab 001 rh white
I'm on a MacPro OSX10.7 with 32 GB RAM.
These are 7T high-res data (0.7 mm isotropic voxel
size) and were previously processed successfully
with v6b.
The log file is attached.
Cheers,
Ed
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