sorry, and what is the gordon parcellation?
On 02/28/2017 04:27 PM, Julie Hall wrote: > I'm using the Freesurfer output to register my DWI images to, on which > I would like to apply graph theory on > > > (Sorry I'm a newbie in imaging so let me know if this is not the > answer you're looking for) > > > > Sent from phone > Please excuse shortness or typographical errors > > On 01 Mar 2017, at 02:42, "Douglas Greve" <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > >> what are you trying to do? get mean values of thickenss in each >> parcellation? If it is an annotation file, then you can use >> mri_segstats with --annot. Run it with --help to get examples >> >> >> On 2/27/17 8:09 PM, Julie Hall wrote: >>> Dear all, >>> >>> I would like to use the Gordon Parcellation as segmentation atlas >>> for my subjects. >>> I have warped this atlas into individual subject space. Then I >>> wanted to use mris_sample_parc to apply this parcallation, but I >>> have a few questions.. >>> >>> 1. Is this the right command to use? >>> 2. When I use this command, I get the following error: could not >>> open translation file >>> /Applications/freesurfer/cma_parcellation_colors.txt >>> >>> I don’t have this color table, should I create one (and how?)? >>> >>> Thank you >>> >>> Julie >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
