And this is in version 6? What platform are you using?
On 03/01/2017 12:07 PM, Gustav Mårtensson wrote: > > Hi, > > Yes, running mri_convert > ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm > > dummy.mgh still produces the error > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 > DICOM File: > /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm > break DICOMRead.c:5228 > > regardless of if the dicom file is in its own directory or not. > > Best, > Gustav > > On 2017-03-01 17:47, Douglas N Greve wrote: >> Yes. I cannot replicate the error on my end. If you copy that dicom file >> to its own directory and try to convert it, do you get the same error? >> >> doug >> >> ps. Please include previous correspondence. >> >> >> On 03/01/2017 02:54 AM, Gustav Mårtensson wrote: >>> Hi Douglas, >>> >>> Thank you for your reply! I've attached one of the dicoms that fails. >>> >>> setenv FS_LOAD_DWI 0 removes the error. Would you recommend doing this >>> over replacing the mri_convert binary in FS 6.0 with the one from FS >>> 5.3.0. >>> >>> Best regards, >>> Gustav >>> It looks like it found something that it thinks is a DWI parameter >>> butisn't, and it is causing it to fail. Can you send me one of the >>> dicoms?In the mean time, if yousetenv FS_LOAD_DWI 0 then the error should >>> go away >>> >>> On 2/28/17 8:33 AM, Gustav Mårtensson wrote: >>> >>> Hi, >>> >>> I have a problem when executing the following command on >>> imagesscanned on 1.5T Philips (Intera) in FS 6.0:recon-all >>> >>> -i0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm-subjid >>> 4450a7a0-27e9-42bc-99ab-1c15519ad9a4 -all -mprage >>> -qcache-hippocampal-subfields-T1 -brainstem-structures -cw256 >>> >>> which during mri_convert produces the error: >>> >>> ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> >>> DICOMs from other scanners works fine as far as we know. >>> Whenprocessing them through 5.3.0 we didn't get any errors like >>> this,regardless of scanner If we just copy the mri_convert >>> binary file fromFS 5.3.0 to FS 6.0 the errors disappears. Would >>> this be the recommendapproach to solve our issues?We are running >>> on Ubuntu 16.04 LTS with FS >>> versionfreesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c. >>> I'veincluded recon-all.log case it is of interest. >>> >>> Thank you for your help! >>> >>> -- >>> *Gustav Mårtensson* | PhD student >>> Division of Clinical Geriatrics >>> Department of Neurobiology, Care Sciences and Society >>> Karolinska Institutet >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> _______________________________________________ Freesurfer mailing >>> list Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The >>> information in this e-mail is intended only for the person to whom >>> it is addressed. If you believe this e-mail was sent to you in error >>> and the e-mail contains patient information, please contact the >>> Partners Compliance HelpLine at >>> http://www.partners.org/complianceline >>> <http://www.partners.org/complianceline> . If the e-mail was sent to >>> you in error but does not contain patient information, please >>> contact the sender and properly dispose of the e-mail. >>> -- >>> *Gustav Mårtensson* | PhD student >>> Division of Clinical Geriatrics >>> Department of Neurobiology, Care Sciences and Society >>> Karolinska Institutet >>> >>> >>> >>> ___________________________________ >>> Karolinska Institutet – a medical university -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
