Hi Joshua
hmmm, label2vol takes our text label file format as input, not a .gii
file. You probably need to ask the Wash U HCP folks how to do this
conversion as I believe there should be a step before label2vol
cheers
Bruce
On Thu, 9 Mar 2017,
Burks, Joshua D (HSC) wrote:
Hello FreeSurfer Developers,
I’m attempting to convert a dlabel file from the Human Connectome Project to
a volumetric ROI that I can use for fiber tractography on other platforms. I
followed the tutorial provided by HCP (hcp-users FAQ #9: How do I map data
between FreeSurfer ... - HCP Wiki) for resampling HCP-derived data for use
in FreeSurfer.
When I run the mri_label2vol command:
mri_label2vol: could not scan # of lines from label file
ERROR reading /home/neuroresearch/workbench/test1.label.gii
Does anyone have thoughts on how to troubleshoot this? I have not seen any
similar errors described in the list.
1) FreeSurfer version: freesurfer-x86_64-apple-darwin16.4.0-dev-20170302
2) Platform: MacOS 10.12.3
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