Dear All, In FS6.0.0, this flag is added to manually adjust watershed threshold instead of its automatic calculation. I went back to the original paper by Segonne et al, and I could identify the prefllooding height h and the post watershed threshold t. I assume the flag refers to the latter. Since the threshold varies between subjects, where is it specified in the log file of a recon-all run? Also, could you indicate a (narrow) range one could start with if trying to manually adjust a run, based on your experience? Also, what is the watershed direction based on t (higher t values lead to more aggressive dura removal, or the other way around?
Thank you very much, Octavian
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
