You can use aparcstats2table to report the thickness, surface area, and volume as a table from a group of subjects. Is that what you want?
On 03/13/2017 02:01 AM, Duy Nguyen wrote: > Dear FreeSurfer expert > > I wonder that whether I can use the command aparc2statstable to get > the cortical thickness or is it better to get the cortical thickness > of a volume defined ROI or is there the easy way to get the most > accurate cortical thickness from ROI > > I am following the pipeline "VolumeRoiCorticalThickness" but I do not > understand how I can get ROI mask called ROI5.nii and TT_avg152T1.nii. > > Sorry if this question is too obvious for me to overlook something. > Any help is appreciated since I am newbie on FreeSurfer. > Best regards, > *--v-- Peace --v--* > *Duy Nguyễn * > *Biomedical Engineering Department- IU HCMC* > *Cell: (+84)909999056* > *Email: duy.nguyen...@gmail.com <mailto:duy.nguyen...@gmail.com>* > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
