If you have the T1 for the mni152 (which is somewhere in the bowels of
the spm distribution), then you just run recon-all on it. I've done this
for myself, so you can just download the result (which I have not
checked thoroughly) from here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mni152.tar.gz
On 3/21/17 1:27 PM, Schoot, Lotte wrote:
Hi Doug and others,
A while ago, I got this reply to my question below (thanks!). I tried to look
in to it, but I am a bit confused (probably because I am very new to
Freesurfer).
My results are on the MNI 152, but I don't understand what you mean with 'run
the mni152 through freesurfer'. Is this the process to get the register.dat
file that is required in mri_vol2surf?
What would you recommend to get the register.dat file? Is it possible to use
bbregister for that? I have tried this, but I don't know whether it is correct:
bbregister --s fsaverage --mov con_0001.nii --init-spm --reg register.dat --bold
Thanks!
Lotte
>If your results are on the MNI152, you can run the mni152 through
>freesurfer, then use mri_vol2surf to map the data to the surface then
>view it with freeview (or tksurfer). You should not confuse this with
>doing the fMRI analysis on the surface. You will not have the benefits
>of surface-based analysis
On 02/15/2017 03:37 PM, Schoot, Lotte wrote:
>/Hi all, />//>/I was wondering if you knew of a way to display SPM results onto the />/inflated surface in Freesurfer. />//>/I have tried using SurfRend but there seem to be problems which might />/be due to the fact the results are obtained with SPM12 and SurfRend />/was designed to work with SPM5. />//>/Thanks, />/Lotte />//>//>/_______________________________________________ />/Freesurfer mailing list />/Freesurfer at nmr.mgh.harvard.edu
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> />/https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer /
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve at nmr.mgh.harvard.edu
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
Phone Number: 617-724-2358
Fax: 617-726-7422
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