sure, upload one and give us detailed instructions on how to find what
you think the problem is (like voxel coords of where you made an edit that
didn't result in the modifications you thought it would)
cheers
Bruce
On Sat, 1 Apr 2017, Octavian Lie wrote:
Dear Bruce,
I am using the recon editing and all voxels removed are 1. If this is the
correct value for removed wm voxels during editing, Is there a way I could
send you a subject?
Thank you,
Octavian
On Sat, Apr 1, 2017 at 8:47 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Octavian
what tool are you using for the deletion of wm voxels? Make sure
it is the "recon editing" tool in freeview or the equivalent. We
do NOT set voxels to 0 when you erase - we set them to 1. This
allows us to detect the erasure and preserve it during
reprocessing.
cheers
Bruce
On Fri, 31 Mar 2017, Octavian Lie wrote:
Dear All,
I am stuck. Several brains I segment need both wm
and pial edits, typically
deleting incorrectly incorporated voxels, such as
dural voxels for pia, and
basal temporal hyperintensity artifact or bright
dural voxels included due
to partial volume effects for wm.
I edited brainmask.mgz or
brain.finalsurfs.manedit.mgz for pia, and wm.mgz
for wm. Rerunning recon-all led as expected to pial
correction, however wm
edits did not end up in ?h.white, despite
increasingly desperate efforts and
commands:
recon-all -autorecon2-wm -autorecon3
recon-all -autorecon2 -autorecon3
recon-all -make all
Please advise, I could FTP one subject to you for
suggestions. Again, edits
here are all voxel deletions and not additions to
wm.mgz.
Thank you,
Octavian
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