Dear Eugenio, Thanks for your suggestion. What about the quality if segmented image which I have attached. Please give your suggestions on the attached hippo-seg. Thanks Ramesh
On Mon, May 1, 2017 at 12:23 AM, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > Dear Ramesh, > > The subfield segmentations requires running recon-all -all first. But you > can greatly speed up the execution with the openmp option. Also, you can > try running two subjects simultaneously, but only for the recon-all -all > part (the subfields use more memory and might crash). > > Cheers, > > /Eugenio > > > Juan Eugenio Iglesias > > Translational Imaging Group > > University College London > > http://www.jeiglesias.com > > http://cmictig.cs.ucl.ac.uk/ > > > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Ramesh Babu < > mgrameshbabu2...@gmail.com> > *Sent:* Saturday, April 29, 2017 9:46:24 AM > *To:* Freesurfer support list > *Subject:* [Freesurfer] Hippo-subfiled Need Help > > Dear Experts, > > I ave done hippocampal subfield segmentation by using 1x1x1 t1 scan. > Please see the attached image and give your suggestions. > > It took nearly 7 hrs 10 min. to complete hippo-subfield segmentation for > one scan by using the command > > recon-all -i grp205_t1.nii -s grp205 -sd grp205 -all > > Started at Wed Apr 26 11:03:34 IST 2017 > Ended at Wed Apr 26 17:17:35 IST 2017 > #@#%# recon-all-run-time-hours 6.234 > recon-all -s grp205 finished without error at Wed Apr 26 17:17:35 IST 2017 > done > > Then for hipposubfield, > > recon-all -s grp205 -sd grp205 -hippocampal-subfields-T1 > > > I want to run for 40 scans grp-1 20 scans and grp-2 20 scans. How to > modify in the command. Since it is taking long time I want to run 10 scans > n give rest again 10 scans. Can I do so? > > I am15.6 GiB ram, Intel® Core™ i7-4790 CPU @ 3.60GHz × 8 processor, > GeForce GT 610/PCIe/SSE2 graphic card.It is octa core processor. Can I > run 8 analysis simultaneously (in 8 separate terminal?). > > Your suggestion will be helpful to me to proceed further. > > Thanks > RB > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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