Thank you Bruce. What if the nifti volume has not been processed at all in Freesurfer? My only aim is to illustrate an overlay on FSAVERAGE, with the obvious caveat of skipping surface construction for this nifti.
Thanks, James On Tue, May 9, 2017 at 2:42 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > if the nifti volume is from an individual subject that has been run > through recon-all (e.g. an fmri map): > > 1. Use bbregister to register the fmri to the recon surfaces > 2. Use mri_volsurf to sample the fmri data onto the surface > 3. Use mri_surf2surf to map from the individual to fsaverage > > cheers > Bruce > > > > On Tue, 9 May 2017, james pardon wrote: > > Dear All, >> Apologies in advance for the naive question. Could you please let me know >> what is the best way of transferring a nifti overlay volume to fsaverage, >> solely for illustration purposes? I think I should start by registering >> with >> fsaverage volume and then overlay with Freeview, but I'm not sure what >> tools >> from Freesurfer I should use for 1) between subject volume registration >> (nifti volume to fsaverage volume) 2) fsaverage volume to fsaverage >> surface. >> >> Thank you, >> James >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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