Dear Artyom, You’re probably running out of RAM memory in those few cases. How much RAM do you have? Cheers, /Eugenio
Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 19 May 2017, at 15:31, Artyom Zinchenko <[email protected]<mailto:[email protected]>> wrote: Dear experts, I am running running hippocampal subfield segmentation using the most recent version of the FSv6.0 on LinuxMint 17.3 Rosa. For some (~ 25%, but not all) participants I did not get the subfields. I have later realized that although segmentation finished with out errors, I got the following message in the end: Error using kvlGEMSMatlab std: :bad_alloc Error in kvlRasterizeAtlasMesh (line 11) Error in segmentSubjectT1_autoEstimateAlveusML (line 628). I have read that I need to check whether the T1resampled.mgz actually exists in the temporary directory of the subject. I have checked and this file is indeed there: SBJ/tmp/hippoSF_T1_v10_right/T1resampled.mgz. Please, let me know if this is a known problem and if there is anything I can do to correct it? Thank you very much in advance, Artyom _______________________________________________ Freesurfer mailing list [email protected]<mailto:[email protected]> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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