Thanks Doug. Just to confirm do I get this voxels number from the cluster summary text file then?
Best Wishes, Elijah Dr. Elijah Mak, Research Associate Department of Psychiatry, Old Age Psychiatry Group University of Cambridge Trinity College, CB21TQ, UK http://www.neuroscience.cam.ac.uk/directory/profile.php?fkm24 On 22 May 2017 at 15:49:16, Douglas N Greve (gr...@nmr.mgh.harvard.edu) wrote: There is not a straight-forward way to do it as mri_glmfit-sim only takes a clusterwise p-value threshold. You can change that until you get 20 voxels. On 05/21/2017 09:48 AM, Elijah Mak wrote: > Hi Everyone, > > How may I threshold the sig.mgh (p<0.001) with a cluster extent K > 20 > voxels? Is it possible to do this in Freesurfer? > > Thanks. > > Best Wishes, > Elijah > > *Dr. Elijah Mak, Research Associate* > Department of Psychiatry, Old Age Psychiatry Group > University of Cambridge > Trinity College, CB21TQ, UK > http://www.neuroscience.cam.ac.uk/directory/profile.php?fkm24 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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