Hi Vincent
the putamen error probably means that the aseg is wrong, and if so, you
can correct the aseg and rerun autorecon2-wm and autorecon3 I believe.
For the medial ttemporal lobe issue is that really cortex? I can't really
tell from the single coronal slice. I'll cc Jean Augustinack to see if she
has an opinion.
cheers
Bruce
On
Fri, 30 Jun 2017, Vincent Koppelmans wrote:
Hi all,
I was wondering how to fix the following issues:
1) The cortical ribbon extends into the gray matter of the putamen (see the top
row of the attached image).
2) Cortical gray matter is missing in the medial temporal lobes (see the bottom
row of the attached image).
I can’t find solutions for these particular issues under
https://surfer.nmr.mgh.harvard.edu/fswiki/Edits
<https://surfer.nmr.mgh.harvard.edu/fswiki/Edits>
How should I approach this? Suggestions are very much welcome.
Thank you!
- Vincent
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