Hi Idil
how do you setup freesurfer? If you are using bash (and it looks like you
are) you should source the *.sh file, not the *.csh. Also, note that you
should use T1.mgz not T1/mgz in your freeview command line
cheers
Bruce
On Tue, 11 Jul
2017, Yagmur Ozdemir 19 wrote:
Hello,
I am installing Freesurfer with my limited coding knowledge and this problem
with freeview came up when I was trying to view the volumes of recon-ed subject.
lab@lab-ThinkStation-E31:~/Desktop/freesurfer/subjects$ freeview -v
practice/mri/T1/mgz
No command 'freeview' found, did you mean:
Command 'treeview' from package 'treeview' (multiverse)
freeview: command not found
I checked and freeview is in the bin, and I even tried to install it according
to its file by sourcing tcl_setup and others, but then this error comes up:
lab@lab-ThinkStation-E31:~/Desktop/freesurfer/bin$ source tcl_setup
bash: tcl_setup: line 47: syntax error near unexpected token `setenv'
bash: tcl_setup: line 47: ` if ( -e $TCLLIBPATH/tcl8.3 ) setenv TCL_LIBRARY
$TCLLIBPATH/tcl8.3'
Can someone please give me any direction for how to solve this issue. I would
appreciate the help very much.
(Freesurfer version 6 & Ubuntu 16.04)
Thank you all,
Idil
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