What did you use to conver to gifti? If you used mris_convert, try it with either --to-scanner or --to-tkr
On 07/04/2017 03:32 AM, Torben Lund wrote: > Hello FreeSurfer Developers > > I'm attempting to evaluate a segmentation result from CAT12, (sorry) > with the Freeview program. For version 1.0 superimposing a gifti > surface on top of a nifti volume works beautifully, but with the new > version 2.0 the orientation is messed up, for the exact same files > (see screenshots in attached jpeg’s). Has anybody else experienced > this problem, and could it potentially be caused by recent changes in > the minc tools which nifti converter I know have been changed between > the two Freeview versions, or are they not used in Freeview. > > Best > Torben > > > > > > Torben Ellegaard Lund > Associate Professor, PhD > Center of Functionally Integrative Neuroscience (CFIN) > Aarhus University > Aarhus University Hospital > Building 10G, 5th floor, room 31 > Noerrebrogade 44 > 8000 Aarhus C > Denmark > Phone: +45 7846 4380 > Fax: +45 7846 4400 > http://www.cfin.au.dk <http://www.cfin.au.dk/> > torbenel...@cfin.au.dk <mailto:torbenel...@cfin.au.dk> (for official > stuff) > torbenel...@me.com <mailto:torbenel...@me.com> (for faster response) > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
