Dear Antonin, I haven’t used CIVET myself, however, if I remember correctly it employs several metrics to estimate cortical thickness, referred to “Link”, “Laplace”, and “Average Near”. The latter one is a re-implementation of the one used in FreeSurfer. They are described and compared here: https://www.ncbi.nlm.nih.gov/pubmed/15588607.
Regarding differences between the pipelines it may be easiest to have a look here: http://www.bic.mni.mcgill.ca/ServicesSoftware/CIVET-2-1-0-Table-of-Contents and especially at the references. Best, Falk Von: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Antonin Skoch Gesendet: Samstag, 15. Juli 2017 00:24 An: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Switch FreeSurfer Desikan-Killiany atlas to Civet Dear Trisanna, thank you for the reference. However, I did not find any specific information in this paper what specific methods are used in CIVET and what is the difference in implementation between CIVET and FreeSurfer. Antonin I believe the cortical thickness measures are taken slightly differently. This paper might offer some insights. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408913/ Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology On Fri, Jul 14, 2017 at 8:29 AM, Antonin Skoch <a...@ikem.cz<mailto:a...@ikem.cz>> wrote: > Dear Zhiquiang, > > as a regular user of FreeSurfer I am wondering, what is the advantage of > using Civet instead of FreeSurfer? > > Are there some functionalities in Civet which are not available in > FreeSurfer? > Or does Civet offer better performance/accuracy/precision in estimation of > surface models for some situations/datasets? > > Antonin Skoch > > > Hello FreeSurfer Developers, > > I am attempting to switch the Desikan-Killiany atlas of FreeSurfer to Civet. > But I have no idea to solve the problem. Would you like to give me some > suggestions or some detailed steps to help me accomplish the tasks ? > > > Best wishes, > Zhiqiang Sha >
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