Hi Bruce, Thanks for the reply. By "coordinates" I mean all the voxels that belong to a certain structure. I think it's called "labels"? I interest in the main structures like Hippocampus, Thalamus, Cerebellum, Amygdala, corpus callosum, etc. If the standard segmentation segments in that specificity only the lobes, it can be good enough... I see the .mgz files, but can not extract them... How should I do that?
Thank for the patience.. Adiel 2017-07-23 18:09 GMT+03:00 Bruce Fischl <fis...@nmr.mgh.harvard.edu>: > Hi Adiel > > what kind of coordinates do you mean, and which brain structures are you > interested in? Our standard segmentation is sampled into the volume in > files named aparc*+aseg.mgz, but the Brodmann area estimates are on the > surface. > > cheers > Bruce > > > > On Sun, 23 Jul 2017, עדיאל חרבש wrote: > > Hi, >> I'm very new to Freesurfer, and actually work with some exist results of >> other people. The results are from the call of "-recon all -autorun". >> I try to get all the coordinates of each of the structures of the brain, >> that segmented. I can find on files only the volumes of some structures >> and >> something that look like detailed coordinates of Brodman Areas only. But I >> can't find the detailed coordinates of all structures in brain. >> >> I'll be grateful if someone can guide me where can I find it, or what >> should >> I do to get these results. >> >> Thanks, >> Adiel >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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