hi kirstie, this makes python 2 a requirement for freesurfer as distributed. i've started a PR that should at least help broaden the requirement to support python 2 and 3.
https://github.com/freesurfer/freesurfer/pull/112 cheers, satra On Thu, Aug 3, 2017 at 3:41 AM, Kirstie Whitaker <[email protected]> wrote: > Hi freesurfer team, > > I just ran into this error. I fixed it by switching from python 3.6 to > python 2.7. > > Does this sound like the right fix? I wonder if it is documented somewhere > on the wiki? > > Thank you for the great tool! > Kx > > On 18 November 2016 at 21:14, Douglas N Greve <[email protected]> > wrote: > >> what happens when you run asegstats2table --help >> >> It does not fail for me. I wonder if it is a python version problem >> >> >> On 11/18/2016 04:01 PM, Elijah Mak wrote: >> > Hi ZK, >> > >> > Thanks. It is great news! I would like to report the following. >> > >> > asegstats2table seems to be acting strangely. >> > >> > File "/Applications/freesurfer_b6/bin/asegstats2table", line 195 >> > >> > print 'ERROR: subjects are not specified (use --subjects SUBJECTS)' >> > >> > Even typing asegstats2table --help leads to the same error message. >> > It was not found in a prev dev built or in 5.3. >> > >> > Thanks. >> > >> > Also, not sure if it's placebo, but freeview seems to be running >> > quicker now. >> > >> > Best Wishes, >> > >> > Elijah >> > >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > [email protected] >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> [email protected] >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > -- > Kirstie Whitaker, PhD > Mozilla Fellow for Science > <https://science.mozilla.org/programs/fellowships> > > Postdoctoral researcher > Department of Psychiatry > University of Cambridge > > *Mailing Address* > Brain Mapping Unit > Department of Psychiatry > Sir William Hardy Building > Downing Street > Cambridge CB2 3EB > > *Phone: *+44 7583 535 307 <+44%207583%20535307> > *Website:* www.kirstiewhitaker.com > *Twitter:* @kirstie_j <https://twitter.com/kirstie_j> > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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